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The Home Grower’s Guide to Simple Cannabis Breeding

This article is sponsored by General Hydroponics, the leading innovator in the field of hydroponics for more than 35 years.

Cannabis propagation is a lengthy and complicated process that can take years to understand and decades to master. However, it doesn’t have to be, at least not for the home grower looking to get into breeding on a small scale. For some, breeding can be as simple as fortifying a small seed stock for next year’s crop, or even taking your favorite strain and keeping its pollen to cross with other desirable female genotypes or phenotypes in the future.

In this guide, we’ll review the basics of small-scale cannabis breeding techniques and illustrate the benefits these techniques may provide to those who want to create their very own unique cannabis seeds and strains.


Cannabis seeds 101: A guide for growers

Why Breed Cannabis at Home?

What’s the big deal about breeding cannabis at home, anyway? For starters, breeding cannabis affords a home grower access to new hybrid genetics while also acting as a conservation mechanism to preserve (and even strengthen) desired genetics for future use. If you have distinct strains and want to create hybrids, breeding on this scale is both easy and effective.

On the other hand, those who wish to carry seed stock through to the next season will find breeding to be a sustainable alternative to keep those genetics around. Not every grower can afford to go back to the nursery or seed company and purchase new genetics between every season. After all, in most states the cost of a single clone can exceed $20, while a dozen cannabis seeds could easily cost $100 or more. For many micro-budget home growers, breeding is the only way to keep genetics around.


Why Buy at the Dispensary When You Can Grow Cannabis at Home for Cheaper?

What Are the Limitations of Breeding for Home Growers?

Breeding cannabis at home does not come without its own setbacks and limitations. Medical and recreational growers in legal states must first comply with all their local ordinances pertaining to home cultivation. These include everything from plant counts to canopy limits and more. Breeding on this scale becomes a matter of adapting to these spatial and quantifiable limitations.

For instance, a popular breeding practice involves propagating genotypes in large batches (sometimes hundreds of plants in number) to see the widest margin of genetic variation possible. This allows growers to select only the most desirable phenotypes to cultivate further. However, when you have a maximum household plant count of 12, this isn’t possible. Home breeders must work around these issues if they wish to both breed and propagate sinsemilla cannabis (without seed) as well.


Home Cannabis Cultivation and Possession Laws: A State-by-State Guide

A Simple Propagation Technique for Small-Batch Breeding

If, despite the potential roadblocks, you’re looking to tackle some small-batch breeding at home, here’s a simple propagation technique you can follow.

What You’ll Need:

  • One mature male cannabis plant, between 2-3 weeks into bloom phase (or collected male pollen)
  • One mature female cannabis plant, between 2-3 weeks into bloom phase
  • Isolated propagation chamber (e.g. a sealed grow tent or equivalent)
  • Gloves
  • Small paint brush
  • Plastic baggies and ties


1. Sanitize

First, you must work within a clean and sanitized environment. Begin by cleaning your isolation chamber in preparation of receiving the female plant. A clean space will both help to prevent cross-contamination and provide a safe and sanitary place for the plant to fully mature. Diluting a small concentration of bleach or isopropyl alcohol with water should do the trick. Don’t forget to sanitize any pollination tools, like your paint brush, as well.

Make sure that your isolation chamber does not contain any female plants that you do not wish to breed with. This will ensure the prevention of unwanted cross-pollination. However, if more than one female cannabis plant must mature within the same space, implementing the following selective pollination technique (which involves using plastic baggies and some ties to protect the pollinated colas) should still adequately protect your room.


4 ways to make use of male cannabis plants

2. Collect Pollen

Male cannabis plants will begin to show their pollen sacs within the first week or two into their bloom phase. Shortly after, these sacs will open and pollen will become abundantly available. Once a desirable male plant has been identified, remove it from any female plants and isolate it immediately. The goal is to collect the staminate pollen without accidentally open-pollinating any other female plant.

Keep the desired male plant in isolation throughout the pollen collection process, then terminate the male to be safe. By using a small paintbrush, you can carefully collect pollen into a plastic bag or glass jar.

Keep in mind that pollen is “alive” and that humidity can dramatically affect the viability of the pollen. For storage, keep male pollen sealed in an airtight container and store in a cold, dark space such as a freezer for long-term holding. If you plan to access your pollen more than a few times per year, it’s generally better to keep it in a refrigerator because the temperature swing from storage to room temperature is much lower. Properly stored pollen may last for over a year under ideal conditions.


Male vs. female cannabis: How to determine the sex of your plant

3. Selectively Propagate

A female cannabis plant in bloom is mature enough to receive pollen once flowers begin to form hair-like stigma. Without complicating this process too much, the object of selective pollination is to place male pollen onto specific branches or colas from which the breeder wishes to produce seeds. Each cola can produce hundreds of seeds if pollinated properly.

Choosing which/how many branches to pollinate will come down to grower/breeder preference. A single cannabis bud that has been pollinated can easily yield 20-30 mature seeds.

To complete this process:

  1. Make sure there is negative pressure in the isolation chamber before continuing.
  2. Prepare by collecting the baggie containing your male pollen, a paintbrush, and gloves.
  3. Gently collect a small amount of pollen from the collection baggie with your brush (a little goes a very, very long way).
  4. Run the brush gently across desired female flowers, making sure to only run the bristles across the tops of each stigma.
  5. Once a cola has been pollinated, you may seal the cola by covering it with a clean plastic baggie and tying it off to form an airtight seal (this will prevent cross-contamination). Note: this step is not necessary if (a) you intend to pollinate the entire plant in isolation, or (b) you do not have any issues with potentially finding a few seeds throughout the rest of your pollinated plant. (Pollen spreads easily, making this is a possibility.)
  6. To prevent any further contamination, keep your isolation chamber sealed throughout the maturation process.

This application process should repeat 1-3 times over the course of a week or two. After the fourth week of bloom, you may suspend your process. Should you need to reintroduce your pollenated female back into a room with other maturing female plants, you can rinse the plant down with clean water immediately following pollination to remove any excess pollen. This isn’t one hundred percent fail-proof, but when done carefully and correctly it can encourage the plant to breathe a little better.


Factors That Impact Your Cannabis Strain: Part 1, Genetics

4. Harvest and Collect Seeds

Your seeds should be fully mature once the plant has completed senescence. For ripe plants containing seed stock, it’s best to let the life cycle exacerbate fully before harvesting to give seeds their maximum time to mature.

After you harvest and dry your plants, it’s then time to collect seeds. Fully mature seeds are darker and often contain striped patterns covering their encasing. If executed correctly, you should yield a healthy quantity of seeds no matter how may colas you choose to pollinate. Congratulations, you’re now a certified home breeder!

  • les

    The problem with this and the reason many home growers don’t breed is the seedbanks and breeders DON’T want you to! This is why fem seed is popular with them, next they’ll find a way to prevent cloning…….. Strains in regular seed are rapidly disappearing.. I hope with legalization they get forced into providing both regular and feminized of all strains…

    • Réal Guy


      Slavery to clone providers ain’t exactly appealing to me as a concept (clone vitality degenerates with the passing of successive generations) ,but i’m no prohibitionist mind and hence i’d also much prefer a free market when it comes to adopting some reproduction strategy over another.

      Yet as far as i’m concerned “regular” vs “autofem” selection is just a non-issue knowing anyone has access to the same KEYS – m’well, unless it’s a (regular…) male plant, actually!!

      Additionally, alternatives as vegetative propagation in a petri dish ain’t no average Joe alternative but who can tell where the future shall take us once prohibition v2.0 is over on planet Itnoc (In The Name Of Children).

      • lorkoos

        There is some incorrect information here. I grew the same cloned plant for ten years without using a mother plant, just re-cloning successive generations. While mutations can occur, that is a pretty rare event.

  • Matt Thomas

    Two words: Colloidal Silver

    • Réal Guy


      I was thinking exactly the same thing.

      Although i was prepared and ready to proceed with CS Spray experimentations, once (years ago), i must admit that i didn’t in the end. Which means i could never acquire 1st-hand background skills, but at least i did my home work reading a lot about it.

      Two scenarios emerged rapidly, then the main difficulty revolved around those 2 “churches” of thought:

      #1) The “simple” 27 Volts (3 x 9 Volts batteries) CS Generator
      #2) The electronic “Constant-Current” CS Generator.

      The most popular option appears to have given quite a bad name to Colloïdal Silver because of argyria (e.g. people turning blue from ingesting contaminated CS…), while the other item became a scam for mercantile opportuni$ts determined to push the cost of ready-made products as high as 600 ~ 700 $ US! Not to mention discussions trying to sort it all out typically turn bad, if not ugly.

      Yet, once the related conceptual obstacle(s) have been dealt with after using appropriate attention (…), it’s no “rocket science” figuring out that CS Sprays are actually a most convenient KEY able to unlock a really useful feature (at least to those planning to grow at home i think): having females only (we like their dry flowers better) when cultivation space is severely restricted…

      Considering a single seed of high-profile hybrid “autofems” can easily sell for 12 ~ 15 $ it should become clear that the ability to generate many dozen seeds of a same quality genetic, starting with only a couple of those, does open the door on a new dimmension: the freedom to remain outside clone and seed markets thereafter. But then again heated debates can occur relatively to the fear of perpetuating hermaphrodite characters, which was said to get worse if/when attempting to self-polinization on a single plant.


      Considring some guys see no issue in the use of Colloïdal Silver with grey sludge while self-polinating it’s only natural that there should be negative comments about hermaphrodite bananas and so on IMO. The loss is theirs while as far as i’m concerned this whole problem is little more than a non issue, considering anyone is free to produce their own autofem seeds all by themselves, starting from 2.

      • Matt Thomas

        WTH are you talking about? CS is available almost everywhere. Check you local drug store.

        • Réal Guy

          > WTH are you talking about?

          Nothing within the grasp of your radar i’m afraid to observe.

          > CS is available almost everywhere.

          Honestly you fail to realize i know better than to waste dollars when it could cost pennies! Too bad some individuals are so quick at throwing significant amounts of money at such elementary problems – and impose that view in rude manners… Search “NanoSilver Generator” for example, it’s an alternative i find more convenient in locations as mine, especially once the initial cost is recovered.

          M’well, depending on the scale of a cultivation project, but somehow i’m not expecting you’ll follow anyway…

  • dee

    So, from the article, it seems I can pollinate a few branches of my female plant to produce seeds on only those branches, but I will also be able to harvest some flowers from the rest of the plant.

    Does there need to be any change in the feeding schedule or nutrients used when I use this method?

    Thank you